labgem.genoscope.cns.frLABGeM prokaryote metabolism and genomics, MicroScope

platform LABGeM Laboratory of Bioinformatics Analyses for Genomics and Metabolism Research Microbial genomics Metabolism & Systems Biology Application fields Epidemiology and Health Environmental Biology Biotechnology Methodological development Genomics Functional Annotation Past projects Services MicroScope platform Software & Databases Trainings MicroScope professional trainings University trainings Scientific communication Publications PhD thesisMembers Job Offers Quality certification Networks Microbial genomics genomes annotation, microscope plateforme Metabolism & System Biology Genomic contexts, sequence analysis, enzymatic reaction networks Bioinformatic & collaborative projects Phylogeny, transcriptomics, structural modeling Microscope platform Annotation, softwares, databases The LABGeM is a bioinformatics team of the UMR 8030 Genomics Metabolics , the basic research structure of Genoscope (the national sequencing center), now part of the France Génomique infrastructure. The genomic data derived from the actual sequencing technologies are of limited interest as such, and in addition, this flood of data tends to increase the number of genes whose functions remain totally unknown. The main objective of our research team is to extract biological knowledge from prokaryotic organisms through the development of bioinformatics tools integrating very diverse sources: raw sequencing data, results of in silico analysis tools, data derived from generic or specific databases, omics data such as transcriptomic, proteomic, metabolomic, and phenomic data. These tools and data are generally made available through MicroScope , an integrated platform dedicated to microbial genome annotation and comparative analysis MicroScope, which offers a free-of-charge service to the scientific community for the integration of new (meta)-genomes. Scientific activities of the LABGeM are centered on the bioinformatics analysis of Microbial (meta)genomes : dynamics and evolution of bacterial genomes, functional annotation of (meta)genomes, taxonomic assignation of metagenomic data Bacterial metabolism & System Biology : prediction, curation and comparison of metabolic networks, investigation for ‘orphan’ enzymes, discovery of new enzymatic activities. These R&D activities participate to one of the main research topic of the UMR Genomics Metabolics”: the elucidation of the metabolism of prokaryotes through the discovery of new chemical reactions catalyzed by the living world. Through diverse research projects, in-house or conducted in national or international collaborations, we focus on biological applications in the following domains: Epidemiology and health , Environmental Biology and Biotechnology (green and white). Highlights The MODAMDH Project in the spotlight Eddy Elisée had the honor of being interviewed by the TV program l’esprit sorcier as part of the MODAMDH project, which is being carried out in collaboration between the L2BMS and LABGEM teams. The film can be viewed here: https://www.youtube.com/watch?v=KOU4pRxS9Wc Read more Stage M2 : Méthode de comparaison de contextes génomiques à l’échelle des pangénomes Mots-clefs : pangénome ; microbiologie environnementale ; évolution des génomes ; contexte génomique ; graphes La pangénomique vise à comprendre la variabilité génétique d’un groupe d’organismes, généralement d’une même espèce, en agrégeant l’information issue de l’ensemble des génomes disponibles plutôt que Read more LABGeM Follow Bioinformatics team in microbial genomics and metabolism at Genoscope. Developer of the MicroScope platform (https://t.co/ahZsgmO8TX) Retweet on Twitter LABGeM Retweeted Jérôme Arnoux @jpjarnoux · 6 May Pleased to share my work in front of other PhD students ? #pangenomic #bacteria #comparativegenomics Reply on Twitter 1787420859566608569 Retweet on Twitter 1787420859566608569 2 Like on Twitter 1787420859566608569 3 Twitter 1787420859566608569 LABGeM @genolabgem · 6 May Today @jpjarnoux is presenting his developments for comparative pangenomics at doctoral school SDSV @UnivParisSaclay @GenoUMR_GM Reply on Twitter 1787418891209043981 Retweet on Twitter 1787418891209043981 3 Like on Twitter 1787418891209043981 5 Twitter 1787418891209043981 Retweet on Twitter LABGeM Retweeted Institut de Biologie François Jacob @cea_jacob_ · 26 Apr 2/2 Le projet #MODAMDH a pour but d’identifier dans la Nature des enzymes capables de remplacer à terme certains procédés industriels utilisant des produits chimiques polluants et coûteux, en combinant #bioinformatique & exploration de la #biodiversité . ℹ️ Reply on Twitter 1783798418457903434 Retweet on Twitter 1783798418457903434 4 Like on Twitter 1783798418457903434 3 Twitter 1783798418457903434 Retweet on Twitter LABGeM Retweeted Institut de Biologie François Jacob @cea_jacob_ · 26 Apr 1/2 [??#àvoir] Nouvel épisode de la série documentaire #Fondamental sur les solutions développées au #CEA pour répondre aux défis énergétiques & climatiques. ?Focus sur le projet #MODAMDH avec Eddy Elisée, bio-informaticien au @GenoLabgem à 00:07:35.? Reply on Twitter 1783798416239173871 Retweet on Twitter 1783798416239173871 4 Like on Twitter 1783798416239173871 5 Twitter 1783798416239173871 Load More LABGeM CEA/Institut de Biologie François Jacob © Genoscope – Centre National de Séquençage 2 rue Gaston Crémieux CP5706 91057 Evry cedex Tél: (+33) 0 1 60 87 25 00 Fax: (+33) 0 1 60 87 25 14 mention légales privacy notice Copyright © 2024 LABGeM . All rights reserved. Theme: Ample by ThemeGrill. Powered by...